scMethrix-class: Class scMethrix
In CompEpigen/scMethrix: Fast and efficient summarization of single cell whole genome bisulfate data
Description
S4 class scMethrix
Slots
assaysA list of two matrices containing 'Methylation' and 'Coverage' information
#slot bins A list of matricies for different size of binning for methylation data
elementMetadataA DataFrame describing rows in correspoding assay matrices.
colDatagenome: the name of the BSgenome that was used to extract CpGs, isHDF5: is it stored in HDF5 Array format
metadataa list of meta data associated with the assays
rowRangesA GRanges object of the genomic coordinates of CpG sites
NAMESNULL
int_colDataNULL
int_metadataNULL
int_elementMetadataNULL
CompEpigen/scMethrix documentation built on Nov. 6, 2021, 3:09 p.m.
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Description
S4 class scMethrix
Slots
assaysA list of two matrices containing 'Methylation' and 'Coverage' information #slot bins A list of matricies for different size of binning for methylation data
elementMetadataA DataFrame describing rows in correspoding assay matrices.
colDatagenome: the name of the BSgenome that was used to extract CpGs, isHDF5: is it stored in HDF5 Array format
metadataa list of meta data associated with the assays
rowRangesA
GRangesobject of the genomic coordinates of CpG sitesNAMESNULL
int_colDataNULL
int_metadataNULL
int_elementMetadataNULL
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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