remove_uncovered: Remove loci that are uncovered across all samples
In CompEpigen/scMethrix: Fast and efficient summarization of single cell whole genome bisulfate data
Description
Usage
Arguments
Details
Value
Examples
View source: R/scmethrix_operations.R
Description
Remove loci that are uncovered across all samples
Usage
1
remove_uncovered(scm = NULL, n_threads = 1, verbose = TRUE)
Arguments
scm
scMethrix; the single cell methylation experiment
n_threads
integer; Maximum number of parallel instances. Default = 1
verbose
boolean; Flag for outputting function status messages. Default = TRUE
Details
Takes scMethrix object and removes loci that are uncovered across all samples
Value
An object of class scMethrix
Examples
1
2
3
data('scMethrix_data')
# Remove uncovered CpGs after subsetting to a single sample
remove_uncovered(subset_scMethrix(scMethrix_data, samples = "C1", by="include"))
CompEpigen/scMethrix documentation built on Nov. 6, 2021, 3:09 p.m.
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Description Usage Arguments Details Value Examples
View source: R/scmethrix_operations.R
Description
Remove loci that are uncovered across all samples
Usage
1 | remove_uncovered(scm = NULL, n_threads = 1, verbose = TRUE)
|
Arguments
scm |
|
n_threads |
integer; Maximum number of parallel instances. Default = 1 |
verbose |
boolean; Flag for outputting function status messages. Default = TRUE |
Details
Takes scMethrix object and removes loci that are uncovered across all samples
Value
An object of class scMethrix
Examples
1 2 3 | data('scMethrix_data')
# Remove uncovered CpGs after subsetting to a single sample
remove_uncovered(subset_scMethrix(scMethrix_data, samples = "C1", by="include"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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