AllelFrequencyFoldChange: AllelFrequencyFoldChange

In CostaLab/sigurd: Single cell Genotyping Using RNA Data

AllelFrequencyFoldChange

Description

Check if a cell is supported by a set of variants.

Usage

AllelFrequencyFoldChange(
  SE,
  VOI = NULL,
  group_of_interest,
  group1 = "group1",
  group2 = "group2",
  maximum_foldchange = NULL,
  minimum_foldchange = NULL,
  minimum_coverage = NULL,
  minimum_allele_freq = NULL,
  maximum_allele_freq = NULL,
  verbose = FALSE
)

Arguments

SE	SummarizedExperiment object.
VOI	The variants variants to be analyzed. If NULL all are used.
group_of_interest	The column data that divides the cells.
group1	The first group.
group2	The second group.
maximum_foldchange	Maximum fold change.
minimum_foldchange	Minimum fold change.
minimum_coverage	Minimum coverage for a variant.
minimum_allele_freq	Minimum allele frequency in both groups.
maximum_allele_freq	Maximum allele frequency in both groups.
verbose	Should the function be verbose? Default = TRUE

CostaLab/sigurd documentation built on Feb. 10, 2025, 11:08 p.m.