SetVariantInfo: SetVariantInfo

In CostaLab/sigurd: Single cell Genotyping Using RNA Data

SetVariantInfo

Description

We add the genotyping information for a set of variants to a Seurat object. The function returns a Seurat object with the values from the specified assay added as meta data.

Usage

SetVariantInfo(
  SE,
  seurat_object,
  information = "consensus",
  variants = NULL,
  consensus_character = TRUE,
  consensus_group = TRUE
)

Arguments

SE	SummarizedExperiment object.
seurat_object	The Seurat object.
information	The assay with the desired information. Default: consensus
variants	A vector of variants.
consensus_character	Should the consensus information be save as a character value?
consensus_group	Should the consensus groups Alt and Both be merged? Has no effect if information is not consensus.

CostaLab/sigurd documentation built on Feb. 10, 2025, 11:08 p.m.