getMutMatrix: getMutMatrix
In CostaLab/sigurd: Single cell Genotyping Using RNA Data
getMutMatrix R Documentation
getMutMatrix
Description
This function gets the allele frequency for a specific allele. It is used in computeAFMutMatrix.
Source: https://github.com/petervangalen/MAESTER-2021
Usage
getMutMatrix(SE, cov, letter, ref_allele, chromosome_prefix)
Arguments
SE
SummarizedExperiment object.
cov
The coverage matrix from MAEGATK/MGATK.
letter
The base we are interested in.
ref_allele
Vector of reference alleles.
chromosome_prefix
The chromosome prefix used.
CostaLab/sigurd documentation built on Feb. 10, 2025, 11:08 p.m.
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| getMutMatrix | R Documentation |
getMutMatrix
Description
This function gets the allele frequency for a specific allele. It is used in computeAFMutMatrix. Source: https://github.com/petervangalen/MAESTER-2021
Usage
getMutMatrix(SE, cov, letter, ref_allele, chromosome_prefix)
Arguments
SE |
SummarizedExperiment object. |
cov |
The coverage matrix from MAEGATK/MGATK. |
letter |
The base we are interested in. |
ref_allele |
Vector of reference alleles. |
chromosome_prefix |
The chromosome prefix used. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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