VariantCorrelationHeatmap: VariantCorrelationHeatmap

In CostaLab/sigurd: Single cell Genotyping Using RNA Data

VariantCorrelationHeatmap

Description

We generate a heatmap showing the correlation of somatic variants with the MT variants. Packages I want to remove. I cannot see where they are used. ggplot2 parallel rcompanion tidyr

Usage

VariantCorrelationHeatmap(
  correlation_results,
  output_path = NULL,
  patient,
  min_alt_cells = 5,
  min_correlation = 0.5,
  width_use = 2000,
  height_use = 2000,
  padding_use = c(165, 165, 2, 2),
  verbose = TRUE
)

Arguments

correlation_results	Data.frame with the correlation results.
output_path	Path to the output folder.
patient	The patient for this heatmap.
min_alt_cells	Minimum number of mutated cells needed, otherwise a correlation will not be plotted.
min_correlation	Minimum correlation needed.
width_use	Width of the heatmap in px.
height_use	Height of the heatmap in px.
padding_use	Space around the heatmap in mm. If this is to low, the variant names might be cut off.
verbose	Should the function be verbose? Default = TRUE

CostaLab/sigurd documentation built on Feb. 10, 2025, 11:08 p.m.