CalculateAltReads: CalculateAltReads
In CostaLab/sigurd: Single cell Genotyping Using RNA Data
View source: R/CalculateAltReads.R
CalculateAltReads R Documentation
CalculateAltReads
Description
We calculate the number of reads covering a variant using forward and reverse reads.
Usage
CalculateAltReads(SE, chromosome_prefix = "chrM")
Arguments
SE
SummarizedExperiment object.
chromosome_prefix
List of matrices for the alternative reads.
CostaLab/sigurd documentation built on Feb. 10, 2025, 11:08 p.m.
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View source: R/CalculateAltReads.R
| CalculateAltReads | R Documentation |
CalculateAltReads
Description
We calculate the number of reads covering a variant using forward and reverse reads.
Usage
CalculateAltReads(SE, chromosome_prefix = "chrM")
Arguments
SE |
SummarizedExperiment object. |
chromosome_prefix |
List of matrices for the alternative reads. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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