CalculateCorrelationPValue: Correlating the SNVs

In CostaLab/sigurd: Single cell Genotyping Using RNA Data

Correlating the SNVs

Description

We perform the correlation of SNVs and calculate the P values.

Usage

CalculateCorrelationPValue(
  variant_values,
  other_mutation,
  all_variants_list,
  value_type = "consensus",
  min_intersecting_cells = 5
)

Arguments

variant_values	The fraction values you are analyzing. A vector.
other_mutation	All other variants you have. A vector of variant names.
all_variants_list	List of fraction values for all the variants you want to compare your variant with.
value_type	Are we using consensus or other information?
min_intersecting_cells	Minimum number of intersecting cells. Correlations with less than this will not be performed.

CostaLab/sigurd documentation built on Feb. 10, 2025, 11:08 p.m.