getRefMatrix: getRefMatrix

In CostaLab/sigurd: Single cell Genotyping Using RNA Data

getRefMatrix

Description

We get the reference values from the MAEGATK result. Source: https://github.com/petervangalen/MAESTER-2021

Usage

getRefMatrix(SE_object, letter, chromosome_prefix = "chrM")

Arguments

SE_object	SummarizedExperiment object.
letter	The base you are analysing. You get a matrix that shows which cells have how many reference reads for this letter.
chromosome_prefix	The chromosome prefix used.

CostaLab/sigurd documentation built on Feb. 10, 2025, 11:08 p.m.