Filtering_VAF_Threshold: Filtering_VAF_Threshold

In CostaLab/sigurd: Single cell Genotyping Using RNA Data

Filtering_VAF_Threshold

Description

We determine the number of mutated cells for a given variant using a vector of VAF thresholds.

Usage

Filtering_VAF_Threshold(SE, variant = NULL, thresholds = NULL, verbose = TRUE)

Arguments

SE	SummarizedExperiment object.
variant	Which variant should be evaluated? Cannot be more than 1 variant at a time.
thresholds	The thresholds to be evaluated. Default between 0.01 and 0.99 in steps of 0.01.
verbose	Should the function be verbose?

CostaLab/sigurd documentation built on Feb. 10, 2025, 11:08 p.m.