SeparatingMatrixToList: SeparatingMatrixToList

In CostaLab/sigurd: Single cell Genotyping Using RNA Data

SeparatingMatrixToList

Description

We separate a matrix of variant information to a list. Each variant is an entry in the list. NoCalls (cells with no reads covering a variant) can be removed. This function gets called by RowWiseSplit in return.

Usage

SeparatingMatrixToList(
  row_use,
  total_matrix,
  consensus,
  assay_to_split = "consensus",
  remove_nocalls = TRUE
)

Arguments

row_use	The row the separate.
total_matrix	The matrix to be split.
assay_to_split	Which assay are we splitting?
remove_nocalls	Do you want to remove NoCall cells?

CostaLab/sigurd documentation built on Feb. 10, 2025, 11:08 p.m.