getReadMatrix: Get the counts for a specific base over all positions.
In CostaLab/sigurd: Single cell Genotyping Using RNA Data
View source: R/getReadMatrix.R
getReadMatrix R Documentation
Get the counts for a specific base over all positions.
Description
Get the counts for a specific base over all positions.
Usage
getReadMatrix(SE, letter, chromosome_prefix = "chrM")
Arguments
SE
SummarizedExperiment object.
letter
The base for which we want the counts.
chromosome_prefix
The chromosome name used as a prefix.
CostaLab/sigurd documentation built on Feb. 10, 2025, 11:08 p.m.
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View source: R/getReadMatrix.R
| getReadMatrix | R Documentation |
Get the counts for a specific base over all positions.
Description
Get the counts for a specific base over all positions.
Usage
getReadMatrix(SE, letter, chromosome_prefix = "chrM")
Arguments
SE |
SummarizedExperiment object. |
letter |
The base for which we want the counts. |
chromosome_prefix |
The chromosome name used as a prefix. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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