Files in FloWuenne/scFunctions
Functions for single cell data analysis
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/DE_Seurat.R
R/Impute_Seurat_MAGIC.R
R/auc_thresh_kmeans.R
R/auc_thresh_kmeans_nextflow.R
R/binarize_regulons.R
R/binarize_regulons_nextflow.R
R/calc_csi_module_activity.R
R/calculate_csi.R
R/calculate_rrs.R
R/export_data_from_seurat.R
R/export_seurat_to_shiny_scCluster.R
R/extract_data_for_shiny_clustering.R
R/perform_fgsea.R
R/plot_bin_regulon_UMAP.R
R/plot_csi_modules.R
R/plot_rrs_ranking.R
R/prepare_clustering_for_shiny.R
R/summarize_cell_types.R
README.md
Tutorials/Rplot001.jpeg
Tutorials/process_SCENIC.Rmd
Tutorials/process_SCENIC.md
Tutorials/process_SCENIC_files/figure-gfm/unnamed-chunk-12-1.png
Tutorials/process_SCENIC_files/figure-gfm/unnamed-chunk-13-1.png
Tutorials/process_SCENIC_files/figure-gfm/unnamed-chunk-15-1.png
Tutorials/process_SCENIC_files/figure-gfm/unnamed-chunk-17-1.png
Tutorials/process_SCENIC_files/figure-gfm/unnamed-chunk-19-1.png
Tutorials/process_SCENIC_files/figure-gfm/unnamed-chunk-20-1.png
Tutorials/process_SCENIC_files/figure-gfm/unnamed-chunk-21-1.png
Tutorials/process_SCENIC_files/figure-gfm/unnamed-chunk-22-1.png
Tutorials/process_SCENIC_files/figure-markdown_strict/unnamed-chunk-12-1.png
Tutorials/process_SCENIC_files/figure-markdown_strict/unnamed-chunk-13-1.png
Tutorials/process_SCENIC_files/figure-markdown_strict/unnamed-chunk-15-1.png
Tutorials/process_SCENIC_files/figure-markdown_strict/unnamed-chunk-17-1.png
Tutorials/process_SCENIC_files/figure-markdown_strict/unnamed-chunk-19-1.png
Tutorials/process_SCENIC_files/figure-markdown_strict/unnamed-chunk-20-1.png
Tutorials/process_SCENIC_files/figure-markdown_strict/unnamed-chunk-21-1.png
Tutorials/process_SCENICprotocol.Rmd
Tutorials/process_SCENICprotocol.html
example_data/metadata_sub.Rds
example_data/regulonAUC_subset.Rds
man/DE_Seurat.Rd
man/auc_thresh_kmeans.Rd
man/auc_thresh_kmeans_nextflow.Rd
man/binarize_regulons.Rd
man/binarize_regulons_nextflow.Rd
man/calc_csi_module_activity.Rd
man/calculate_csi.Rd
man/calculate_rrs.Rd
man/export_data_from_seurat.Rd
man/export_seurat_to_shiny_scCluster.Rd
man/extract_data_for_shiny_clustering.Rd
man/impute_seurat_MAGIC.Rd
man/perform_fgsea.Rd
man/plot_bin_regulon_UMAP.Rd
man/plot_csi_modules.Rd
man/plot_rrs_ranking.Rd
man/prepare_clustering_for_shiny.Rd
man/summarize_cell_types.Rd
scFunctions.Rproj
