API for Mouse-Imaging-Centre/RMINC
Statistical Tools for Medical Imaging NetCDF (MINC) Files
| Global functions | |
|---|---|
| .onLoad | Source code |
| AIC.anatModel | Source code |
| AIC.mincLm | Source code |
| AIC.vertexLm | Source code |
| AICc | Man page Source code |
| AICc.anatModel | Source code |
| AICc.mincLm | Source code |
| AICc.vertexLm | Source code |
| BIC.anatModel | Source code |
| BIC.mincLm | Source code |
| BIC.vertexLm | Source code |
| RMINC | Man page |
| RMINC_MASKED_VALUE | Man page |
| `likeVolume<-` | Source code |
| `maskFile<-` | Source code |
| addHierarchyToDefs | Source code |
| addVolumesToHierarchy | Man page Source code |
| add_colour_bar | Man page |
| add_opacity | Man page Source code |
| anatAnova | Man page |
| anatApply | Man page |
| anatCombineStructures | Man page |
| anatCreateVolume | Man page |
| anatEffectSize | Man page Source code |
| anatFDR | Man page Source code |
| anatFDR.anatLmer | Man page Source code |
| anatFDR.anatModel | Man page Source code |
| anatGetAll | Man page Source code |
| anatGetAll_old | Man page |
| anatGetFile | Source code |
| anatLm | Man page |
| anatLmer | Man page |
| anatLmerEstimateDF | Man page |
| anatMean | Man page |
| anatRenameRows | Source code |
| anatSd | Man page |
| anatSum | Man page |
| anatSummaries | Man page |
| anatSummarize | Man page |
| anatToVolume | Man page |
| anatVar | Man page |
| anat_summary | Source code |
| as.data.frame.anatMatrix | Man page |
| as.minc | Man page Source code |
| atlas_get_all | Source code |
| check_model_list | Source code |
| check_step_sizes | Man page Source code |
| civet.CreateBrainViewFile | Man page |
| civet.CreateBrainViewROI | Man page |
| civet.checkVersion | Man page Source code |
| civet.computeNativeTissueVolumes | Man page |
| civet.computeNativeToStxRescalingFactor | Man page |
| civet.computeStxTissueVolumes | Man page |
| civet.computeTissueVolumes | Man page |
| civet.flattenForDplyr | Man page |
| civet.getAllFilenames | Man page Source code |
| civet.getFilename | Man page |
| civet.getFilenameCerebrumMask | Man page Source code |
| civet.getFilenameClassify | Man page Source code |
| civet.getFilenameCsfPve | Man page Source code |
| civet.getFilenameGrayMatterPve | Man page Source code |
| civet.getFilenameGrayMatterSurfaces | Man page Source code |
| civet.getFilenameLinearTransform | Man page Source code |
| civet.getFilenameMeanSurfaceCurvature | Man page Source code |
| civet.getFilenameMidSurfaces | Man page Source code |
| civet.getFilenameNonlinearTransform | Man page Source code |
| civet.getFilenameSkullMask | Man page Source code |
| civet.getFilenameStxT1 | Man page Source code |
| civet.getFilenameWhiteMatterPve | Man page Source code |
| civet.getFilenameWhiteMatterSurfaces | Man page Source code |
| civet.getFilenamesCorticalArea | Man page Source code |
| civet.getFilenamesCorticalThickness | Man page Source code |
| civet.getFilenamesCorticalVolume | Man page Source code |
| civet.organizeCivetDatFilesAtlas | Man page |
| civet.readAllCivetFiles | Man page |
| civet.readCBRAIN | Man page Source code |
| civet.readCivetDatFiles | Man page |
| civet.readQC | Man page |
| civet.vertexFilenames | Man page Source code |
| civet.vertexTable | Man page Source code |
| civet_filenames_1_1_12 | Source code |
| civet_filenames_1_1_9 | Source code |
| civet_filenames_2_0_0 | Source code |
| clean_up_manifold_triangles | Man page Source code |
| closestVertex | Man page |
| colourVector | Source code |
| colour_mesh | Man page Source code |
| compare_models | Man page Source code |
| compare_models.anatModel | Source code |
| compare_models.mincLm | Source code |
| compare_models.vertexLm | Source code |
| components_to_map | Man page Source code |
| connected_components | Man page Source code |
| coords2ind | Source code |
| copyABIinfo | Source code |
| copyExtraAttributes | Source code |
| count_labels | Source code |
| create_mesh | Man page Source code |
| create_parallel_mask | Source code |
| cross_product_triangle_area | Source code |
| edgelen_sq_to_cot_angles | Source code |
| extract_column | Man page |
| failing_mclapply | Source code |
| failing_mcmapply | Source code |
| filter_problematic_triangles | Source code |
| find_all_edges | Source code |
| find_cot_angles | Source code |
| find_edgelengths_sq | Source code |
| find_laplace_beltrami_nonzero_elements | Source code |
| find_n_neigh_verts | Source code |
| find_neigh_verts | Source code |
| find_num_n_neigh_vert | Source code |
| find_triangle_areas | Source code |
| find_vertex_areas | Source code |
| fixBranching | Source code |
| fix_names | Source code |
| fwhm_to_tsim | Source code |
| getCall.mincLm | Source code |
| getRMINCTestData | Man page |
| getSlice | Source code |
| get_volume | Source code |
| graph_tfce | Source code |
| graph_tfce_wqu | Source code |
| groupingVector | Source code |
| hanatAnova | Man page Source code |
| hanatFDR | Man page Source code |
| hanatLm | Man page Source code |
| hanatLmer | Man page Source code |
| hanatLmerEstimateDF | Man page Source code |
| hanatPlot | Man page Source code |
| hanatToVisGraph | Man page Source code |
| hanatToVolume | Man page Source code |
| hanatView | Man page Source code |
| ind2coords | Source code |
| is.minc | Man page Source code |
| laplace_beltrami_operator | Man page Source code |
| laplace_beltrami_smoothing | Man page Source code |
| lateralizeDefs | Source code |
| launch_shinyRMINC | Man page Source code |
| likeVolume | Man page Source code |
| likeVolume<- | Man page |
| line_obj_to_voxel | Man page |
| lut_to_palette | Man page Source code |
| makeMICeDefsHierachical | Man page Source code |
| map_to_colours | Man page Source code |
| maskFile | Man page Source code |
| maskFile<- | Man page |
| matrixApply | Source code |
| mcMincApply | Man page Source code |
| mesh_area | Source code |
| minc.append.history | Man page |
| minc.dimensions.sizes | Man page |
| minc.get.history | Man page |
| minc.get.hyperslab | Man page |
| minc.ray.trace | Man page Source code |
| minc.separation.sizes | Man page |
| mincAnova | Man page Source code |
| mincApply | Man page Source code |
| mincApplyRCPP | Man page Source code |
| mincArray | Man page Source code |
| mincAttributes | Man page Source code |
| mincContour | Man page Source code |
| mincConvertTagToMincArrayCoordinates | Man page Source code |
| mincConvertVoxelMatrix | Man page Source code |
| mincConvertVoxelToWorld | Man page Source code |
| mincConvertWorldMatrix | Man page Source code |
| mincConvertWorldToVoxel | Man page Source code |
| mincCorrelation | Man page Source code |
| mincEffectSize | Man page Source code |
| mincFDR | Man page Source code |
| mincFDR.mincLmer | Man page Source code |
| mincFDR.mincLogLikRatio | Man page Source code |
| mincFDR.mincMultiDim | Man page Source code |
| mincFDR.mincSingleDim | Man page Source code |
| mincFDRMask | Man page Source code |
| mincFDRThresholdVector | Man page Source code |
| mincFileCheck | Man page Source code |
| mincFindPeaks | Man page Source code |
| mincGetMask | Man page |
| mincGetTagFile | Man page Source code |
| mincGetVector | Man page Source code |
| mincGetVolume | Man page Source code |
| mincGetVoxel | Man page Source code |
| mincGetWorldVoxel | Man page Source code |
| mincImage | Man page Source code |
| mincLabelPeaks | Man page Source code |
| mincLm | Man page Source code |
| mincLm_c_wrapper | Source code |
| mincLmer | Man page Source code |
| mincLmerEstimateDF | Man page Source code |
| mincLogLikRatio | Man page |
| mincLogLikRatioParametricBootstrap | Man page |
| mincMean | Man page Source code |
| mincPairedTtest | Man page Source code |
| mincPlotAnatAndStatsSlice | Man page Source code |
| mincPlotPeak | Man page Source code |
| mincPlotSimpleSliceSeries | Source code |
| mincPlotSliceSeries | Man page Source code |
| mincPlotStatsSliceSeries | Source code |
| mincRandomize | Man page Source code |
| mincRandomize.mincLm | Man page Source code |
| mincRandomize_core | Source code |
| mincRayTraceStats | Man page Source code |
| mincSd | Man page Source code |
| mincSelectRandomVoxels | Man page |
| mincSum | Man page Source code |
| mincSummary | Man page Source code |
| mincTFCE | Man page Source code |
| mincTFCE.matrix | Man page Source code |
| mincTFCE.mincLm | Man page Source code |
| mincTFCE.mincMultiDim | Man page Source code |
| mincTFCE.mincSingleDim | Man page Source code |
| mincTable | Man page |
| mincTriplanarSlicePlot | Man page Source code |
| mincTtest | Man page Source code |
| mincVar | Man page Source code |
| mincVectorToVoxelCoordinates | Man page |
| mincWilcoxon | Man page Source code |
| mincWriteVolume | Man page |
| mincWriteVolume.default | Man page |
| mincWriteVolume.mincMultiDim | Man page |
| mincWriteVolume.mincSingleDim | Man page |
| minc_history | Man page |
| modelToTree | Source code |
| neighbour_list | Source code |
| new_file | Source code |
| obj_montage | Man page |
| obj_to_graph | Man page Source code |
| pMincApply | Man page Source code |
| plot.bic_lines | Man page |
| plot.bic_obj | Man page |
| plot.obj_mesh | Man page |
| plotLocator | Source code |
| position_to_edgelengths_sq | Source code |
| print.RMINC_MASKED_VALUE | Source code |
| print.mincLm_randomization | Source code |
| print.mincLmer | Source code |
| print.mincLogLikRatio | Source code |
| print.mincMultiDim | Source code |
| print.mincQvals | Source code |
| print.mincSingleDim | Source code |
| print.mincTFCE_randomization | Source code |
| print.mincVoxel | Source code |
| print.model_comparison | Source code |
| print.vertexMultiDim | Source code |
| pt2 | Man page |
| qMincApply | Man page Source code |
| qMincMap | Man page Source code |
| qMincReduce | Man page Source code |
| qMincRegistry | Man page Source code |
| rcpp_minc_apply | Source code |
| read_line_obj | Man page |
| read_obj | Man page Source code |
| replaceColours | Source code |
| replaceValues | Source code |
| runRMINCTestbed | Man page |
| scaleSlice | Source code |
| scaleSliceToPalette | Source code |
| setMincAttributes | Man page Source code |
| setRMINCMaskedValue | Man page Source code |
| simplify2minc | Man page Source code |
| simplify_masked | Man page Source code |
| sliceSeriesLayout | Source code |
| summary.mincQvals | Source code |
| summary.model_comparison | Source code |
| tenacious_remove_registry | Source code |
| thresholds | Man page Source code |
| thresholds.mincQvals | Man page Source code |
| thresholds.minc_randomization | Man page Source code |
| triangle_to_edgelengths_sq | Source code |
| tsim_to_fwhm | Source code |
| tstep_size_select | Source code |
| vals_to_numeric | Source code |
| verboseRun | Man page |
| vertexAnova | Man page Source code |
| vertexApply | Man page Source code |
| vertexAtlasApply | Man page Source code |
| vertexEffectSize | Man page Source code |
| vertexFDR | Man page Source code |
| vertexFDR.vertexLmer | Man page Source code |
| vertexFDR.vertexMultiDim | Man page Source code |
| vertexFindPeaks | Man page Source code |
| vertexLm | Man page Source code |
| vertexLmer | Man page Source code |
| vertexLmerEstimateDF | Man page Source code |
| vertexLookup | Man page |
| vertexMean | Man page Source code |
| vertexSd | Man page Source code |
| vertexSelect | Man page |
| vertexSum | Man page Source code |
| vertexSummaries | Man page |
| vertexTFCE | Man page |
| vertexTFCE.character | Man page |
| vertexTFCE.matrix | Man page |
| vertexTFCE.numeric | Man page |
| vertexTFCE.vertexLm | Man page |
| vertexTable | Man page |
| vertexVar | Man page Source code |
| volume.combineMaskVolumes | Man page |
| volume.explodeLabelVolume | Man page |
| voxel_anova_wrapper | Source code |
| voxel_atlas_defs | Man page |
| writeVertex | Man page |
