import_magma_files_metadata: Import MAGMA files metadata
In NathanSkene/MAGMA_Celltyping: Find Causal Cell-Types Underlying Complex Trait Genetics
View source: R/import_magma_files_metadata.R
import_magma_files_metadata R Documentation
Import MAGMA files metadata
Description
Import metadata from the SNP-to-gene mapping files available in
MAMGA_Files_Public.
Usage
import_magma_files_metadata(file_types, use_local = TRUE, verbose = TRUE)
Arguments
file_types
MAGMA file types to import.
Both ".genes.out" and ".genes.raw" are needed to run MAGMA.Celltyping
cell-type enrichment functions
use_local
Whether to use a local copy of the metadata.
TRUEUse the metadata included with MAGMA.Celltyping
(less frequently updated).
FALSEImport metadata from the GitHub repository
(more frequently updated).
verbose
Print messages.
NathanSkene/MAGMA_Celltyping documentation built on Aug. 21, 2023, 8:55 a.m.
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View source: R/import_magma_files_metadata.R
| import_magma_files_metadata | R Documentation |
Import MAGMA files metadata
Description
Import metadata from the SNP-to-gene mapping files available in MAMGA_Files_Public.
Usage
import_magma_files_metadata(file_types, use_local = TRUE, verbose = TRUE)
Arguments
file_types |
MAGMA file types to import. Both ".genes.out" and ".genes.raw" are needed to run MAGMA.Celltyping cell-type enrichment functions |
use_local |
Whether to use a local copy of the metadata.
|
verbose |
Print messages. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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