magma_install: Install the MAGMA command line tool

In NathanSkene/MAGMA_Celltyping: Find Causal Cell-Types Underlying Complex Trait Genetics

Install the MAGMA command line tool

Description

Checks whether MAGMA is currently installed, and if not, tries to automatically install it. For a list of all changes across MAGMA versions, please see here.

Usage

magma_install(
  dest_dir = find_install_dir(),
  desired_version = "latest",
  upgrade = FALSE,
  verbose = TRUE
)

Arguments

dest_dir	Folder in which to install MAGMA.
desired_version	Desired version of MAGMA.
upgrade	If MAGMA is already installed and is not the latest version, should it be upgraded to the latest version? (Default: FALSE).
verbose	Print messages.

Value

Path to MAGMA executable.

Source

MAGMA website

MAGMA.celltyping documentation

Examples

magma <- MAGMA.Celltyping::magma_install()

NathanSkene/MAGMA_Celltyping documentation built on Aug. 21, 2023, 8:55 a.m.