Files in Open-Systems-Pharmacology/TLF-Library
TLF Library

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.gitattributes
.github/workflows/update-dev-website.yml
.github/workflows/update-release-website.yml
.gitignore
.gitmodules
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/aaa-utilities.R R/aggregation-input.R R/aggregation-summary.R R/atom-plots.R R/boxwhisker-datamapping.R R/boxwhisker-get-measure.R R/boxwhisker-plotconfiguration.R R/cumulative-time-profile-datamapping.R R/datamapping-grouping.R R/datamapping-groupmapping.R R/datamapping-range.R R/datamapping-xy.R R/datamapping-xygroup.R R/ddiratio-datamapping.R R/error-checks.R R/font.R R/global-vars.R R/helpers.R R/histogram-datamapping.R R/label.R R/messages.R R/obs-vs-pred-datamapping.R R/observed-data-mapping.R R/pkratio-datamapping.R R/pkratio-get-measure.R R/plot-boxwhisker.R R/plot-cumulative-time-profile.R R/plot-ddiratio.R R/plot-grid.R R/plot-histogram.R R/plot-obs-vs-pred.R R/plot-observed-time-profile.R R/plot-piechart.R R/plot-pkratio.R R/plot-qq.R R/plot-res-vs-pred.R R/plot-simulated-time-profile.R R/plot-timeprofile.R R/plot-tornado.R R/plotconfiguration-axis.R R/plotconfiguration-background.R R/plotconfiguration-export.R R/plotconfiguration-label.R R/plotconfiguration-legend.R R/plotconfiguration-sub-classes.R R/plotconfiguration.R R/qq-datamapping.R R/themes.R R/timeprofile-datamapping.R R/timeprofile-helper.R R/timeprofile-plotconfiguration.R R/tlf-env.R R/tornado-datamapping.R R/tornado-plotconfiguration.R R/utilities-aesthetics.R R/utilities-axis.R R/utilities-background.R R/utilities-enums.R R/utilities-export.R R/utilities-ggplot.R R/utilities-label.R R/utilities-legend.R R/utilities-mapping.R R/utilities-molecule-plots.R R/utilities-theme.R R/utilities-tlf.R R/utils.R R/zzz.R README.md
_pkgdown.yml
appveyor.yml
inst/WORDLIST
inst/extdata/NotoSans-Regular.ttf
inst/extdata/Symbola.ttf
inst/extdata/ospsuite-data.csv
inst/extdata/ospsuite-metadata.csv
inst/extdata/template-theme.json
inst/extdata/test-data.csv
inst/extdata/tlf-env.RData
inst/plot-maker/app.R inst/plot-maker/helpers.R inst/theme-maker/app.R inst/theme-maker/helpers.R
inst/themes/dark-theme.json
inst/themes/excel-theme.json
inst/themes/hc-theme.json
inst/themes/matlab-theme.json
inst/themes/minimal-theme.json
inst/themes/template-theme.json
man/AestheticFields.Rd man/AestheticProperties.Rd man/AestheticSelectionKeys.Rd man/AggregationInput.Rd man/AggregationSummary.Rd man/Alignments.Rd man/AtomPlots.Rd man/AxisConfiguration.Rd man/BackgroundConfiguration.Rd man/BackgroundElement.Rd man/BoxWhiskerDataMapping.Rd man/BoxWhiskerPlotConfiguration.Rd man/CaptionProperties.Rd man/ColorMaps.Rd man/ColorPalettes.Rd man/CumulativeTimeProfileDataMapping.Rd man/CumulativeTimeProfilePlotConfiguration.Rd man/DDIRatioDataMapping.Rd man/DDIRatioPlotConfiguration.Rd man/DataMappings.Rd man/DefaultDataMappingValues.Rd man/Directions.Rd man/ExportConfiguration.Rd man/ExportFormats.Rd man/ExportUnits.Rd man/Font.Rd man/FontFaces.Rd man/GroupMapping.Rd man/Grouping.Rd man/HistogramDataMapping.Rd man/HistogramPlotConfiguration.Rd man/HorizontalJustification.Rd man/Label.Rd man/LabelConfiguration.Rd man/LegendConfiguration.Rd man/LegendPositions.Rd man/LegendTypes.Rd man/LineElement.Rd man/Linetypes.Rd man/MoleculePlots.Rd man/ObsVsPredDataMapping.Rd man/ObsVsPredPlotConfiguration.Rd man/ObservedDataMapping.Rd man/PKRatioDataMapping.Rd man/PKRatioPlotConfiguration.Rd man/Percentile0-grapes.Rd man/Percentile1-grapes.Rd man/Percentile10-grapes.Rd man/Percentile100-grapes.Rd man/Percentile15-grapes.Rd man/Percentile2.5-grapes.Rd man/Percentile20-grapes.Rd man/Percentile25-grapes-1.5IQR.Rd man/Percentile25-grapes.Rd man/Percentile5-grapes.Rd man/Percentile50-grapes.Rd man/Percentile75-grapes-plus-1.5IQR.Rd man/Percentile75-grapes.Rd man/Percentile80-grapes.Rd man/Percentile85-grapes.Rd man/Percentile90-grapes.Rd man/Percentile95-grapes.Rd man/Percentile97.5-grapes.Rd man/Percentile99-grapes.Rd man/PieChartDataMapping.Rd man/PieChartPlotConfiguration.Rd man/PlotAnnotationTextSize.Rd man/PlotConfiguration.Rd man/PlotConfigurations.Rd man/PlotGridConfiguration.Rd man/QQDataMapping.Rd man/QQPlotConfiguration.Rd man/RangeDataMapping.Rd man/ResVsPredDataMapping.Rd man/ResVsPredPlotConfiguration.Rd man/ResVsTimeDataMapping.Rd man/ResVsTimePlotConfiguration.Rd man/Scaling.Rd man/Shapes.Rd man/TagPositions.Rd man/Theme.Rd man/ThemeAestheticMaps.Rd man/ThemeAestheticSelections.Rd man/ThemeBackground.Rd man/ThemeFont.Rd man/ThemePlotConfigurations.Rd man/TickLabelTransforms.Rd man/TimeProfileDataMapping.Rd man/TimeProfilePlotConfiguration.Rd man/TornadoDataMapping.Rd man/TornadoPlotConfiguration.Rd man/VerticalJustification.Rd man/XAxisConfiguration.Rd man/XYDataMapping.Rd man/XYGDataMapping.Rd man/YAxisConfiguration.Rd man/addErrorbar.Rd man/addLine.Rd man/addRibbon.Rd man/addScatter.Rd man/addWatermark.Rd man/asLabel.Rd man/createWatermarkGrob.Rd man/dot-ViridisPalettes.Rd man/dot-addBoxWhisker.Rd man/dot-addErrorbarLayer.Rd man/dot-addLLOQLayer.Rd man/dot-addLineLayer.Rd man/dot-addOutliers.Rd man/dot-addScatterLayer.Rd man/dot-applyColorPalette.Rd man/dot-asLegendCaptionSubset.Rd man/dot-asThemeAestheticSelections.Rd man/dot-checkIsBetween.Rd man/dot-checkIsInAvailableAngles.Rd man/dot-checkPlotFontFamily.Rd man/dot-createPlotLegendPosition.Rd man/dot-createPlotScale.Rd man/dot-createPlotTickLabels.Rd man/dot-createPlotTicks.Rd man/dot-dataMappingLabel.Rd man/dot-getAblineValues.Rd man/dot-getAesPropertyColumnNameFromLabels.Rd man/dot-getAesPropertyLengthFromLabels.Rd man/dot-getAesStringMapping.Rd man/dot-getAestheticValues.Rd man/dot-getAestheticValuesFromConfiguration.Rd man/dot-getColorNamesForFirstAesValues.Rd man/dot-getDistributionFit.Rd man/dot-getDistributionMed.Rd man/dot-getFirstAestheticValues.Rd man/dot-getNextAestheticValues.Rd man/dot-getResetAestheticvalues.Rd man/dot-getSameAestheticValues.Rd man/dot-getSameLimitsFromMapping.Rd man/dot-getThemePropertyFor.Rd man/dot-getTitlesFromFamilyTag.Rd man/dot-isLogTicksIncludedInLimits.Rd man/dot-mergeLegend.Rd man/dot-parseValueToObject.Rd man/dot-parseVariableFromObject.Rd man/dot-parseVariableToObject.Rd man/dot-plotObservedTimeProfileCore.Rd man/dot-plotSimulatedTimeProfileCore.Rd man/dot-plotTimeProfileCore.Rd man/dot-removeInfiniteValues.Rd man/dot-sanitizeLabel.Rd man/dot-selectFontFamily.Rd man/dot-setDataMapping.Rd man/dot-setPlotConfiguration.Rd man/dot-setPlotObject.Rd man/dot-smartMapping.Rd man/dot-stringWrap.Rd man/dot-updateAesProperties.Rd man/dot-updateAxes.Rd man/dot-updateSameAxes.Rd man/dot-updateSymmetricAxes.Rd man/dot-validateEitherOrNullInput.Rd man/dot-validateIsStrictlyPositive.Rd man/exportPlot.Rd man/exportPlotConfigurationCode.Rd man/geomTLFPoint.Rd man/getBoxWhiskerMeasure.Rd man/getDefaultCaptions.Rd man/getDualAxisPlot.Rd man/getGreekTickLabels.Rd man/getGuestValues.Rd man/getGuestValuesFromDataMapping.Rd man/getLabelWithUnit.Rd man/getLegendCaption.Rd man/getLegendPosition.Rd man/getLinesFromFoldDistance.Rd man/getLnTickLabels.Rd man/getLogTickLabels.Rd man/getPKRatioMeasure.Rd man/getPercentileTickLabels.Rd man/getPiTickLabels.Rd man/getSameLimits.Rd man/getSqrtTickLabels.Rd man/getSymmetricLimits.Rd man/getTLFSettings.Rd man/initializePlot.Rd man/isBetween.Rd man/loadTLFSettings.Rd man/loadThemeFromJson.Rd man/mean-1.96sd.Rd man/mean-plus-1.96sd.Rd man/mean-plus-sd.Rd man/mean-sd.Rd man/median-1.5IQR.Rd man/median-IQR.Rd man/median-plus-1.5IQR.Rd man/median-plus-IQR.Rd man/plotBoxWhisker.Rd man/plotCumulativeTimeProfile.Rd man/plotDDIRatio.Rd man/plotGrid.Rd man/plotHistogram.Rd man/plotObsVsPred.Rd man/plotObservedTimeProfile.Rd man/plotPKRatio.Rd man/plotPieChart.Rd man/plotQQ.Rd man/plotResVsPred.Rd man/plotResVsTime.Rd man/plotSimulatedTimeProfile.Rd man/plotTimeProfile.Rd man/plotTornado.Rd man/resetTLFSettingsToDefault.Rd man/runPlotMaker.Rd man/runThemeMaker.Rd man/saveTLFSettings.Rd man/saveThemeToJson.Rd man/setBackground.Rd man/setBackgroundPanelArea.Rd man/setBackgroundPlotArea.Rd man/setCaptionColor.Rd man/setCaptionFill.Rd man/setCaptionLabels.Rd man/setCaptionLinetype.Rd man/setCaptionOrder.Rd man/setCaptionShape.Rd man/setCaptionSize.Rd man/setCaptionVisibility.Rd man/setDefaultAggregationBins.Rd man/setDefaultAggregationFunctions.Rd man/setDefaultAggregationLabels.Rd man/setDefaultAlphaRatio.Rd man/setDefaultErrorbarCapSize.Rd man/setDefaultExportParameters.Rd man/setDefaultLLOQLinetype.Rd man/setDefaultLegendPosition.Rd man/setDefaultLegendTitle.Rd man/setDefaultLogTicks.Rd man/setDefaultMaxCharacterWidth.Rd man/setDefaultWatermark.Rd man/setGrid.Rd man/setLegend.Rd man/setLegendCaption.Rd man/setLegendFont.Rd man/setLegendPosition.Rd man/setLegendTitle.Rd man/setPlotExport.Rd man/setPlotExportDimensions.Rd man/setPlotExportFormat.Rd man/setPlotExportSize.Rd man/setPlotLabels.Rd man/setWatermark.Rd man/setXAxis.Rd man/setXGrid.Rd man/setY2Axis.Rd man/setYAxis.Rd man/setYGrid.Rd man/tlfEnv.Rd man/tlfSettingsNames.Rd man/tlfStatFunctions.Rd man/updateExportDimensionsForLegend.Rd man/updateTimeProfileLegend.Rd man/useDarkTheme.Rd man/useExcelTheme.Rd man/useHighChartTheme.Rd man/useMatlabTheme.Rd man/useMinimalTheme.Rd man/useTemplateTheme.Rd man/useTheme.Rd
rakefile.rb
tests/data/population.csv
tests/data/results_from_PKSim.csv
tests/data/results_from_R.csv
tests/data/timeProfileSixIndividualsData.csv
tests/dev/aesDefault-necessity.R tests/dev/scripts.R tests/dev/test-basic-config-workflow.R tests/dev/test-basic-mapping-workflow.R tests/dev/test-boxplot.R tests/dev/test-histo.R tests/dev/test-pkratio.R tests/dev/test-theme-mapping-workflow.R tests/dev/test-timeprofile-groups.R tests/dev/test-timeprofile-range-errorbar.R tests/dev/test-timeprofile.R tests/dev/test-tornado-plots.R tests/testthat.R
tests/testthat/_snaps/export/test-export-obs-vs-pred.png
tests/testthat/_snaps/font-label/plot-with-markdown.svg
tests/testthat/_snaps/font-label/very-long-flipped-labels.svg
tests/testthat/_snaps/font-label/very-long-labels.svg
tests/testthat/_snaps/pkratio/pkratioplot.svg
tests/testthat/_snaps/plot-grid/long-labels-in-plotgrid.svg
tests/testthat/_snaps/plot-grid/plotgrid-works-as-expected.svg
tests/testthat/_snaps/plot-obs-vs-pred/basic-with-and-without-error-bars.svg
tests/testthat/_snaps/plot-obs-vs-pred/basic-with-error-bars.svg
tests/testthat/_snaps/plot-obs-vs-pred/basic.svg
tests/testthat/_snaps/plot-obs-vs-pred/fold-distance-many-folds-diagonal.svg
tests/testthat/_snaps/plot-obs-vs-pred/fold-distance-many-folds.svg
tests/testthat/_snaps/plot-obs-vs-pred/fold-distance-one-fold.svg
tests/testthat/_snaps/plot-obs-vs-pred/fold-distance-several-folds.svg
tests/testthat/_snaps/plot-obs-vs-pred/fold-distance-simple-abline.svg
tests/testthat/_snaps/plot-obs-vs-pred/lloq-both.svg
tests/testthat/_snaps/plot-obs-vs-pred/lloq-default.svg
tests/testthat/_snaps/plot-obs-vs-pred/lloq-horizontal.svg
tests/testthat/_snaps/plot-obs-vs-pred/lloq-vertical.svg
tests/testthat/_snaps/plot-obs-vs-pred/lloq-with-groups.svg
tests/testthat/_snaps/plot-obs-vs-pred/very-long-group-names.svg
tests/testthat/_snaps/plot-timeprofile/basic.svg
tests/testthat/_snaps/plot-timeprofile/timeprofile-with-error-bars.svg
tests/testthat/_snaps/plot-timeprofile/timeprofile-without-error-bars.svg
tests/testthat/_snaps/plot-timeprofile/with-lloq-and-plotconfiguration.svg
tests/testthat/_snaps/plot-timeprofile/with-lloq.svg
tests/testthat/_snaps/plot-timeprofile/with-observed-and-sim-data.svg
tests/testthat/_snaps/plot-timeprofile/with-observed-data-only.svg
tests/testthat/pkRatioDataExample.RData
tests/testthat/test-atoms.R tests/testthat/test-axes.R tests/testthat/test-check-errors-messages.R tests/testthat/test-ddi-ratio.R tests/testthat/test-expand.R tests/testthat/test-export.R tests/testthat/test-font-label.R tests/testthat/test-getPKRatioMeasure.R tests/testthat/test-no-na-warnings.R tests/testthat/test-pkratio.R tests/testthat/test-plot-configuration.R tests/testthat/test-plot-grid.R tests/testthat/test-plot-obs-vs-pred.R tests/testthat/test-plot-timeprofile.R tests/testthat/test-predefined-functions.R tests/testthat/test-theme.R tests/testthat/test-tlf.R tests/testthat/test-tornado.R
tlf.Rproj
vignettes/.gitignore
vignettes/atom-plots.Rmd vignettes/box-whisker-vignette.Rmd
vignettes/figures/plot-maker/data-mapping-x.png
vignettes/figures/plot-maker/data-mapping.png
vignettes/figures/plot-maker/import-env-data.png
vignettes/figures/plot-maker/import-file-data.png
vignettes/figures/plot-maker/imported-data.png
vignettes/figures/plot-maker/pk-ratio-plot.png
vignettes/figures/plot-maker/plot-aesthetics.png
vignettes/figures/plot-maker/plot-axes.png
vignettes/figures/plot-maker/plot-background.png
vignettes/figures/plot-maker/plot-export.png
vignettes/figures/plot-maker/plot-labels.png
vignettes/figures/plot-maker/plot-legend.png
vignettes/figures/plot-maker/plot-regression.png
vignettes/figures/plot-maker/plot-selection.png
vignettes/figures/plot-maker/plot-tornado.png
vignettes/figures/plot-maker/start-plot-maker.png
vignettes/figures/theme-maker/aes-map-set.png
vignettes/figures/theme-maker/aes-map.png
vignettes/figures/theme-maker/axes.png
vignettes/figures/theme-maker/background.png
vignettes/figures/theme-maker/labels.png
vignettes/figures/theme-maker/legend.png
vignettes/figures/theme-maker/pk-ratio-color.png
vignettes/figures/theme-maker/pk-ratio-linetype-next.png
vignettes/figures/theme-maker/pk-ratio-linetype.png
vignettes/figures/theme-maker/pk-ratio-selection-key.png
vignettes/figures/theme-maker/sample-plots.png
vignettes/figures/theme-maker/save-theme.png
vignettes/figures/theme-maker/start-theme-maker.png
vignettes/figures/theme-maker/use-saved-theme.png
vignettes/histogram.Rmd vignettes/pk-ratio-vignette.Rmd vignettes/plot-configuration.Rmd vignettes/plot-maker.Rmd vignettes/plot-time-profile.Rmd vignettes/theme-maker.Rmd vignettes/timeprofilepres-1.pdf vignettes/tlf.Rmd
vignettes/workflow.png
vignettes/workflowSlide.png
Open-Systems-Pharmacology/TLF-Library documentation built on Feb. 8, 2025, 11:22 a.m.