Global functions | |
---|---|
$,PacBioCmpH5-method | Man page |
.NUMBERS | Man page |
.PAIRS | Man page |
.bMap | Man page |
.bMapC | Man page |
.f | Man page |
.getAlignmentsWithFeaturesAsDataFrame | Man page |
.hasDataset | Man page |
.matchVersion | Man page |
.ofBasecalls | Man page |
.ofPulses | Man page |
H5ObjOrNull-class | Man page |
PacBioAlnH5 | Man page |
PacBioAlnH5-class | Man page |
PacBioBasH5 | Man page |
PacBioBasH5-class | Man page |
PacBioCmpH5 | Man page |
PacBioCmpH5-class | Man page |
PacBioDataFile-class | Man page |
PacBioPlsH5 | Man page |
PacBioPlsH5-class | Man page |
PacBioTrcH5 | Man page |
PacBioTrcH5-class | Man page |
[,PacBioCmpH5,ANY,ANY,ANY-method | Man page |
alnGroup | Man page |
alnIndex | Man page |
applyZMWs | Man page |
associateWithContext | Man page |
colnames,PacBioCmpH5-method | Man page |
computeConsensus | Man page |
doWithPlsAndCmp | Man page |
doWithPlsAndTrc | Man page |
getAccuracy | Man page |
getAcqParams | Man page |
getAcqParams,MultiPart-method | Man page |
getAcqParams,PacBioBasH5-method | Man page |
getAdvanceTime | Man page |
getAlignmentBlock | Man page |
getAlignments | Man page |
getAlignments,PacBioAlnH5-method | Man page |
getAlignments,PacBioCmpH5-method | Man page |
getAlignmentsRaw | Man page |
getAlignmentsWithFeatures | Man page |
getBarcodeLabels | Man page |
getBarcodeMatrix | Man page |
getBarcodeScores | Man page |
getBaseEvents | Man page |
getBaseEvents,MultiPart-method | Man page |
getBaseEvents,PacBioBasH5-method | Man page |
getBasecalls | Man page |
getBaselineLevel | Man page |
getBaselineLevel,MultiPart-method | Man page |
getBaselineLevel,PacBioBasH5-method | Man page |
getBaselineLevel,PacBioPlsH5-method | Man page |
getBaselineSigma | Man page |
getBaselineSigma,MultiPart-method | Man page |
getBaselineSigma,PacBioBasH5-method | Man page |
getBaselineSigma,PacBioPlsH5-method | Man page |
getByTemplatePosition | Man page |
getCCSBasecalls | Man page |
getCallsForReads | Man page |
getCallsInRange | Man page |
getChannel | Man page |
getChannelToBaseMap | Man page |
getChannelToBaseMap,MultiPart-method | Man page |
getChannelToBaseMap,PacBioBasH5-method | Man page |
getChi2 | Man page |
getClassifierQV | Man page |
getClassifierQV,PacBioPlsH5-method | Man page |
getConsensusForIdxs | Man page |
getConsensusForReads | Man page |
getConsensusInRange | Man page |
getCoverageInRange | Man page |
getCumulativeAdvanceTime | Man page |
getDeletionQV | Man page |
getDeletionQV,HasBaseAccessors-method | Man page |
getDeletionQV,PacBioBasH5-method | Man page |
getDeletionQV,PacBioCmpH5-method | Man page |
getDeletionTag | Man page |
getDeletionTag,HasBaseAccessors-method | Man page |
getDeletionTag,PacBioBasH5-method | Man page |
getDeletionTag,PacBioCmpH5-method | Man page |
getFullRefNames | Man page |
getHoleNumbers | Man page |
getHoleNumbers,MultiPart-method | Man page |
getHoleNumbers,PacBioBasH5-method | Man page |
getHoleNumbers,PacBioCmpH5-method | Man page |
getIPD | Man page |
getInsertionQV | Man page |
getInsertionQV,HasBaseAccessors-method | Man page |
getInsertionQV,PacBioBasH5-method | Man page |
getInsertionQV,PacBioCmpH5-method | Man page |
getIsPulse | Man page |
getKmerContext | Man page |
getLocalPolymerizationRate | Man page |
getMachineName | Man page |
getMaxSignal | Man page |
getMeanSignal | Man page |
getMergeQV | Man page |
getMergeQV,HasBaseAccessors-method | Man page |
getMergeQV,PacBioBasH5-method | Man page |
getMergeQV,PacBioCmpH5-method | Man page |
getMidSignal | Man page |
getMidStdDevSignal | Man page |
getMoleculeIndex | Man page |
getMovieName | Man page |
getMovieName,MultiPart-method | Man page |
getMovieName,PacBioBasH5-method | Man page |
getMovieName,PacBioCmpH5-method | Man page |
getNumEvent | Man page |
getNumEvent,PacBioBasH5-method | Man page |
getNumEvent,PacBioPlsH5-method | Man page |
getNumPasses | Man page |
getPkmid | Man page |
getPolymerizationRate | Man page |
getPreBaseFrames | Man page |
getPulseEvents | Man page |
getPulseEvents,MultiPart-method | Man page |
getPulseEvents,PacBioPlsH5-method | Man page |
getPulseIndex | Man page |
getPulseWidth | Man page |
getQualityValue | Man page |
getQualityValue,HasBaseAccessors-method | Man page |
getQualityValue,PacBioBasH5-method | Man page |
getQualityValue,PacBioCmpH5-method | Man page |
getQualityValue,PacBioPlsH5-method | Man page |
getReadEnd | Man page |
getReadLength | Man page |
getReadScore | Man page |
getReadScore,HasBaseAccessors-method | Man page |
getReadScore,MultiPart-method | Man page |
getReadScore,PacBioCmpH5-method | Man page |
getReadStart | Man page |
getReadsInRange | Man page |
getRefFullName | Man page |
getRefLength | Man page |
getRefMD5 | Man page |
getRefName | Man page |
getRefNames | Man page |
getRefPath | Man page |
getRegionsTable | Man page |
getRegionsTable,MultiPart-method | Man page |
getRegionsTable,PacBioBasH5-method | Man page |
getSNR | Man page |
getSNR,MultiPart-method | Man page |
getSNR,PacBioBasH5-method | Man page Man page |
getSNR,PacBioCmpH5-method | Man page |
getSNR,PacBioPlsH5-method | Man page |
getStartFrame | Man page |
getStartFrame,HasBaseAccessors-method | Man page |
getStartFrame,PacBioBasH5-method | Man page |
getStartFrame,PacBioCmpH5-method | Man page |
getStartTime | Man page |
getSubstitutionQV | Man page |
getSubstitutionQV,HasBaseAccessors-method | Man page |
getSubstitutionQV,PacBioBasH5-method | Man page |
getSubstitutionQV,PacBioCmpH5-method | Man page |
getSubstitutionTag | Man page |
getSubstitutionTag,HasBaseAccessors-method | Man page |
getSubstitutionTag,PacBioBasH5-method | Man page |
getSubstitutionTag,PacBioCmpH5-method | Man page |
getTemplateEnd | Man page |
getTemplatePosition | Man page |
getTemplateSpan | Man page |
getTemplateStart | Man page |
getTemplateStrand | Man page |
getTraces | Man page |
getUnrolledReadLength | Man page |
getUnrolledTemplateSpan | Man page |
getVersion | Man page |
getWidthInFrames | Man page |
getWidthInFrames,HasBaseAccessors-method | Man page |
getWidthInFrames,PacBioBasH5-method | Man page |
getWidthInFrames,PacBioPlsH5-method | Man page |
getZMWs | Man page |
getZScore | Man page |
head,PacBioCmpH5-method | Man page |
initialize,PacBioBasH5-method | Man page |
initialize,PacBioDataFile-method | Man page |
isSorted | Man page |
makeContextDataTable | Man page |
makePlsAndTrcProcessor | Man page |
matrixOrNull-class | Man page |
movieInfo | Man page |
nrow,PacBioAlnH5-method | Man page |
nrow,PacBioCmpH5-method | Man page |
pbh5 | Man page |
pbh5-package | Man page |
refGroup | Man page |
refInfo | Man page |
restrictCmpH5 | Man page |
show,MultiPart-method | Man page |
show,PacBioCmpH5-method | Man page |
show,PacBioDataFile-method | Man page |
stringOrNull-class | Man page |
summarizeByContext | Man page |
summary,PacBioCmpH5-method | Man page |
templatePositionFromAln | Man page |
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