getAlignmentsRaw: Return Encoded Alignments
In PacificBiosciences/R-pbh5: Interface to Pacific Biosciences HDF5 Files
Description
Usage
Arguments
Details
Value
Examples
Description
Returns the encoded alignments as described in the specification for
cmp.h5 files.
Usage
1
getAlignmentsRaw(cmpH5, idx)
Arguments
cmpH5
An object of class PacBioCmpH5.
idx
The indices of the alignments to retrieve.
Details
Alignments are encoded in a compressed format.
Value
A list of integer vectors representing each alignment.
Examples
1
2
3
4
5
require(pbh5)
cmpH5 <- PacBioCmpH5(system.file("h5_files", "aligned_reads.cmp.h5",
package = "pbh5"))
rawAlns <- getAlignmentsRaw(cmpH5)
head(rawAlns[[1]])
PacificBiosciences/R-pbh5 documentation built on May 7, 2019, 11:54 p.m.
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Description Usage Arguments Details Value Examples
Description
Returns the encoded alignments as described in the specification for cmp.h5 files.
Usage
1 | getAlignmentsRaw(cmpH5, idx)
|
Arguments
cmpH5 |
An object of class |
idx |
The indices of the alignments to retrieve. |
Details
Alignments are encoded in a compressed format.
Value
A list of integer vectors representing each alignment.
Examples
1 2 3 4 5 | require(pbh5)
cmpH5 <- PacBioCmpH5(system.file("h5_files", "aligned_reads.cmp.h5",
package = "pbh5"))
rawAlns <- getAlignmentsRaw(cmpH5)
head(rawAlns[[1]])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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