getConsensusForIdxs: Return Consensus For Indices
In PacificBiosciences/R-pbh5: Interface to Pacific Biosciences HDF5 Files
Description
Usage
Arguments
Value
Examples
Description
Get the consensus sequence from the indices.
Usage
1
getConsensusForIdxs(cmpH5, idx = 1:nrow(cmpH5))
Arguments
cmpH5
An object of class PacBioCmpH5.
idx
The indices of the alignments to return.
Value
Returns a vector of characters.
Examples
1
2
3
4
require(pbh5)
cmpH5 <- PacBioCmpH5(system.file("h5_files", "aligned_reads.cmp.h5",
package = "pbh5"))
head(getConsensusForIdxs(cmpH5))
PacificBiosciences/R-pbh5 documentation built on May 7, 2019, 11:54 p.m.
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Description Usage Arguments Value Examples
Description
Get the consensus sequence from the indices.
Usage
1 | getConsensusForIdxs(cmpH5, idx = 1:nrow(cmpH5))
|
Arguments
cmpH5 |
An object of class |
idx |
The indices of the alignments to return. |
Value
Returns a vector of characters.
Examples
1 2 3 4 | require(pbh5)
cmpH5 <- PacBioCmpH5(system.file("h5_files", "aligned_reads.cmp.h5",
package = "pbh5"))
head(getConsensusForIdxs(cmpH5))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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