PacBioBasH5-class: Class "PacBioBasH5"

In PacificBiosciences/R-pbh5: Interface to Pacific Biosciences HDF5 Files

Description

The base h5 (bas.h5) file represents basecalls. This file format is used to store information about called bases derived from pulses. This file-format additionally contains a subset of the pulse information used in the ascertainment of bases. It is a proper-subset of the information stored in pls.h5 files.

Objects from the Class

Objects can be created by calls of the form PacBioBasH5(fileName).

Slots

baseEvents:

Object of class "matrixOrNull"

baseCallsG:

Object of class "H5ObjOrNull"

ccsBaseEvents:

Object of class "matrixOrNull"

ccsBaseCallsG:

Object of class "H5ObjOrNull"

version:

Object of class "stringOrNull"

fileName:

Object of class "character"

ePtr:

Object of class "externalptr"

Extends

Class "PacBioDataFile", directly. Class "H5File", by class "PacBioDataFile", distance 2. Class "H5Obj", by class "PacBioDataFile", distance 3. Class "H5ObjOrNull", by class "PacBioDataFile", distance 4.

Methods

initialize

signature(.Object = "PacBioBasH5"):

Examples

  showClass("PacBioBasH5")

PacificBiosciences/R-pbh5 documentation built on May 7, 2019, 11:54 p.m.