getReadsInRange: Retrieves Reads in Specified Range
In PacificBiosciences/R-pbh5: Interface to Pacific Biosciences HDF5 Files

Description Usage Arguments Value Examples

'getReadsInRange' retrieves reads in range based on arguments refSeq, refStart, refEnd and idx.

1	getReadsInRange(cmpH5, refSeq, refStart = 1, refEnd = NA, idx = 1:nrow(cmpH5))

`cmpH5`	An object of class `PacBioCmpH5`.
`refSeq`	Reference sequence from which to retrieve reads.
`refStart`	Reference start point from which to retrieve reads.
`refEnd`	Reference end point from which to retrieve reads.
`idx`	The indices of the alignments to return.

'getReadsInRange' returns a vector of integers.

  cmpH5 <- PacBioCmpH5(system.file("h5_files",  "aligned_reads.cmp.h5", package = "pbh5"))
  readsInRange <- getReadsInRange(cmpH5, 1, 100, 200)
  class(readsInRange)
  head(readsInRange)