getStartTime: Computes the Start Time of Polymerization

Description Usage Arguments Value Examples

Description

'getStartTime' computes the start time, in seconds, of polymerization for each base in specified indexes. This dataset is optional so this function might not succeed.

Usage

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  getStartTime(cmpH5, idx, unit = c("seconds", "frames"))

Arguments

cmpH5

An object of class PacBioCmpH5.

idx

The indices of the alignments to return.

unit

The unit of the returned values

Value

'getStartTime' returns a list of numeric vectors, where each vector corresponds to one alignment, and each value within that vector corresponds to the start time of polymerization for a particular nucleotide.

Examples

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  ## Not run: 
  require(pbh5)
  cmpH5 <- PacBioCmpH5(system.file("h5_files",  "aligned_reads.cmp.h5", package = "pbh5"))
  getStartTime(cmpH5)
  
## End(Not run)

PacificBiosciences/R-pbh5 documentation built on May 7, 2019, 11:54 p.m.