Description Usage Arguments Value Examples
'getStartTime' computes the start time, in seconds, of polymerization for each base in specified indexes. This dataset is optional so this function might not succeed.
1 | getStartTime(cmpH5, idx, unit = c("seconds", "frames"))
|
cmpH5 |
An object of class |
idx |
The indices of the alignments to return. |
unit |
The unit of the returned values |
'getStartTime' returns a list of numeric vectors, where each vector corresponds to one alignment, and each value within that vector corresponds to the start time of polymerization for a particular nucleotide.
1 2 3 4 5 6 | ## Not run:
require(pbh5)
cmpH5 <- PacBioCmpH5(system.file("h5_files", "aligned_reads.cmp.h5", package = "pbh5"))
getStartTime(cmpH5)
## End(Not run)
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