Files in PacificBiosciences/R-pbh5
Interface to Pacific Biosciences HDF5 Files
DESCRIPTION
INSTALL
LICENSE
NAMESPACE
R/cmpH5Utils.R
R/pacBioIO.R
R/plsH5Utils.R
R/trcH5Utils.R
README.md
inst/h5_files/aligned_reads.cmp.h5
inst/h5_files/m110818_075520_42141_c100129202555500000315043109121112_s1_p0.bas.h5
inst/h5_files/m110818_075520_42141_c100129202555500000315043109121112_s2_p0.bas.h5
inst/regression_tests/multi-stream.R
man/PacBioAlnH5-class.Rd
man/PacBioBasH5-class.Rd
man/PacBioCmpH5-class.Rd
man/PacBioDataFile-class.Rd
man/PacBioPlsH5-class.Rd
man/PacBioTrcH5-class.Rd
man/alnIndex.Rd
man/applyZMWs.Rd
man/doWithPlsAndCmp.Rd
man/getAlignmentBlock.Rd
man/getAlignments.Rd
man/getAlignmentsRaw.Rd
man/getAlignmentsWithFeatures.Rd
man/getBarcodeLabels.Rd
man/getBaseEvents.Rd
man/getBasecalls.Rd
man/getBaselineSigma.Rd
man/getCallsInRange.Rd
man/getChannel.Rd
man/getConsensusForIdxs.Rd
man/getCoverageInRange.Rd
man/getCumulativeAdvanceTime.Rd
man/getHoleNumbers.Rd
man/getIPD.Rd
man/getLocalPolymerizationRate.Rd
man/getMachineName.Rd
man/getNumPasses.Rd
man/getPkmid.Rd
man/getPolymerizationRate.Rd
man/getPulseWidth.Rd
man/getQualityValue.Rd
man/getReadsInRange.Rd
man/getRefPath.Rd
man/getRegionsTable.Rd
man/getStartTime.Rd
man/getTemplatePosition.Rd
man/getTemplateSpan.Rd
man/getTraces.Rd
man/getUnrolledTemplateSpan.Rd
man/getVersion.Rd
man/getZMWs.Rd
man/getZScore.Rd
man/isSorted.Rd
man/makeContextDataTable.Rd
man/pbh5-internal.Rd
man/pbh5-package.Rd
man/restrictCmpH5.Rd
src/pacBioIO.c
tests/testall.R
tests/tinyTestHarness.R
vignettes/pbh5.Rnw
