getRefPath: Get data from refGroup table.
In PacificBiosciences/R-pbh5: Interface to Pacific Biosciences HDF5 Files
Description
Usage
Arguments
Value
Examples
Description
Gets an element from refGroup table using any of name, index, or fasta
name.
Usage
1
getRefPath(cmpH5, refSeq)
Arguments
cmpH5
refSeq
Any of: index, name, or name from the fasta file.
Value
character representing the absolute path to the reference group.
Examples
1
2
3
4
5
gc()
require(pbh5)
cmpH5 <- PacBioCmpH5(system.file("h5_files", "aligned_reads.cmp.h5", package = "pbh5"))
getRefPath(cmpH5, 1) == getRefPath(cmpH5, "ref000001")
getRefMD5(cmpH5, 1)
PacificBiosciences/R-pbh5 documentation built on May 7, 2019, 11:54 p.m.
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Description Usage Arguments Value Examples
Description
Gets an element from refGroup table using any of name, index, or fasta name.
Usage
1 | getRefPath(cmpH5, refSeq)
|
Arguments
cmpH5 |
|
refSeq |
Any of: index, name, or name from the fasta file. |
Value
character representing the absolute path to the reference group.
Examples
1 2 3 4 5 | gc()
require(pbh5)
cmpH5 <- PacBioCmpH5(system.file("h5_files", "aligned_reads.cmp.h5", package = "pbh5"))
getRefPath(cmpH5, 1) == getRefPath(cmpH5, "ref000001")
getRefMD5(cmpH5, 1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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