PacBioPlsH5-class: Class "PacBioPlsH5"

In PacificBiosciences/R-pbh5: Interface to Pacific Biosciences HDF5 Files

Description

The pulse h5 (pls.h5) class represents basecalls and pulsecalls. Pulsecalls are translated to basecalls and that mapping is contained in the pls.h5 file. The pulse h5 class "contains" an bas.h5 file.

Objects from the Class

Objects can be created by calls of the form PacBioPlsH5(fileName).

Slots

pulseEvents:

Object of class "matrixOrNull"

pulseCallsG:

Object of class "H5ObjOrNull"

baseEvents:

Object of class "matrixOrNull"

baseCallsG:

Object of class "H5ObjOrNull"

version:

Object of class "stringOrNull"

fileName:

Object of class "character"

ePtr:

Object of class "externalptr"

Extends

Class "PacBioBasH5", directly. Class "PacBioDataFile", by class "PacBioBasH5", distance 2. Class "H5File", by class "PacBioBasH5", distance 3. Class "H5Obj", by class "PacBioBasH5", distance 4. Class "H5ObjOrNull", by class "PacBioBasH5", distance 5.

Methods

getQualityValue

signature(h5Obj = "PacBioPlsH5"): ...

Examples

showClass("PacBioPlsH5")

PacificBiosciences/R-pbh5 documentation built on May 7, 2019, 11:54 p.m.