getPolymerizationRate: Computes the Polymerization Rate for each Alignment
In PacificBiosciences/R-pbh5: Interface to Pacific Biosciences HDF5 Files
Description
Usage
Arguments
Details
Value
Examples
Description
'getPolymerizationRate' computes the polymerization rate for each
alignment in the cmpH5 file.
Usage
1
getPolymerizationRate(cmpH5, idx = seq.int(1, nrow(cmpH5)))
Arguments
cmpH5
An object of class PacBioCmpH5.
idx
The indices of the alignments to return.
Details
Each alignment in the dataset has one polymerization rate value.
Value
Returns a vector of polymerization rates.
Examples
1
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## Not run:
require(pbh5)
cmpH5 <- PacBioCmpH5(system.file("h5_files", "aligned_reads.cmp.h5",
package = "pbh5"))
pRate <- getPolymerizationRate(cmpH5)
plot(density(pRate, na.rm = TRUE), xlab = "Polymerization Rate")
## End(Not run)
PacificBiosciences/R-pbh5 documentation built on May 7, 2019, 11:54 p.m.
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Description Usage Arguments Details Value Examples
Description
'getPolymerizationRate' computes the polymerization rate for each alignment in the cmpH5 file.
Usage
1 | getPolymerizationRate(cmpH5, idx = seq.int(1, nrow(cmpH5)))
|
Arguments
cmpH5 |
An object of class |
idx |
The indices of the alignments to return. |
Details
Each alignment in the dataset has one polymerization rate value.
Value
Returns a vector of polymerization rates.
Examples
1 2 3 4 5 6 7 8 | ## Not run:
require(pbh5)
cmpH5 <- PacBioCmpH5(system.file("h5_files", "aligned_reads.cmp.h5",
package = "pbh5"))
pRate <- getPolymerizationRate(cmpH5)
plot(density(pRate, na.rm = TRUE), xlab = "Polymerization Rate")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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