getChannel: Pulsecall-level Metrics

Description Usage Arguments Details Value

Description

Retrieve matrices (or vectors) of features stored in the pls.h5 files. This information is not necessarily stored in the pls.h5 file and code should check before depending on its existence. Additionally, some of these fields are available in both pls and bas files and caution should be taken in ensuring that the appropriate value is retrieved.

Usage

1
  getChannel(plsH5, holeNumbers = getHoleNumbers(plsH5), ...)

Arguments

plsH5

An object created by PacBioPlsH5

holeNumbers

Which ZMWs to grab.

...

currently ignored

Details

In order to determine the meaning of the particular features consult the PacBio bas.h5 documentation.

Value

A list of numeric vectors or matrices depending on the size of the dataset to be retrieved.


PacificBiosciences/R-pbh5 documentation built on May 7, 2019, 11:54 p.m.