getAlignments: Return Alignments
In PacificBiosciences/R-pbh5: Interface to Pacific Biosciences HDF5 Files
Description
Usage
Arguments
Details
Value
Examples
Description
Return alignments from a class which contains alignments.
Usage
1
getAlignments(h5Obj, ...)
Arguments
h5Obj
An object containing alignments.
...
Extra arguments – See the particular class documentation for
specific methods.
Details
Currently, alignments are two column matrices of mode character.
Value
A list of alignment matrices.
Examples
1
2
3
4
5
require(pbh5)
cmpH5 <- PacBioCmpH5(system.file("h5_files", "aligned_reads.cmp.h5", package = "pbh5"))
nucleotideSeq <- getAlignments(cmpH5)
class(nucleotideSeq)
head(nucleotideSeq[[1]])
PacificBiosciences/R-pbh5 documentation built on May 7, 2019, 11:54 p.m.
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Description Usage Arguments Details Value Examples
Description
Return alignments from a class which contains alignments.
Usage
1 | getAlignments(h5Obj, ...)
|
Arguments
h5Obj |
An object containing alignments. |
... |
Extra arguments – See the particular class documentation for specific methods. |
Details
Currently, alignments are two column matrices of mode character.
Value
A list of alignment matrices.
Examples
1 2 3 4 5 | require(pbh5)
cmpH5 <- PacBioCmpH5(system.file("h5_files", "aligned_reads.cmp.h5", package = "pbh5"))
nucleotideSeq <- getAlignments(cmpH5)
class(nucleotideSeq)
head(nucleotideSeq[[1]])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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