getZScore: Compute the Z-Score
In PacificBiosciences/R-pbh5: Interface to Pacific Biosciences HDF5 Files

Description Usage Arguments Value Examples

'getZScore' computes the Z-score for each alignment. Z-score is generally an internal metric within Pacific Biosciences and might very well not exist in external cmp.h5 files.

1	getZScore(cmpH5, idx = seq.int(1, nrow(cmpH5)))

`cmpH5`	An object of class `PacBioCmpH5`.
`idx`	The indices of the alignments to retrieve.

'getZScore' is returned as a vector of numbers.

  ## Not run: 
  require(pbh5)
  cmpH5 <- PacBioCmpH5(system.file("h5_files",  "aligned_reads.cmp.h5",
  package = "pbh5"))
  zscore <- getZScore(cmpH5)
  plot(zscore)
  
## End(Not run)