NOTT2019_get_promoter_interactome_data: Get cell type-specific promoter/emhancer/interactome data

In RajLabMSSM/echoannot: echoverse module: Annotate fine-mapping results

Get cell type-specific promoter/emhancer/interactome data

Description

Brain cell-specific epigenomic data from Nott et al. (2019).

Usage

NOTT2019_get_promoter_interactome_data(dat = NULL)

Arguments

dat	data.table of genomic coordinates to query with. Set as NULL to return genome-wide data.

Source

Nott et al. (2019)

See Also

Other NOTT2019: NOTT2019_bigwig_metadata, NOTT2019_epigenomic_histograms(), NOTT2019_get_epigenomic_peaks(), NOTT2019_get_interactions(), NOTT2019_get_interactome(), NOTT2019_get_promoter_celltypes(), NOTT2019_get_regulatory_regions(), NOTT2019_plac_seq_plot(), NOTT2019_superenhancers(), get_NOTT2019_interactome(), get_NOTT2019_superenhancer_interactome()

Examples

dat <- echodata::BST1
annot_sub <- NOTT2019_get_promoter_interactome_data(dat=dat)

RajLabMSSM/echoannot documentation built on Oct. 26, 2023, 2:41 p.m.