NOTT2019_get_regulatory_regions: Get regulatory regions: Nott2019

In RajLabMSSM/echoannot: echoverse module: Annotate fine-mapping results

Get regulatory regions: Nott2019

Description

Get epigenomic peak ranges from Nott2019.

Usage

NOTT2019_get_regulatory_regions(
  as_granges = FALSE,
  nThread = 1,
  verbose = TRUE
)

Arguments

as_granges	Return results a GRanges object instead of a data.table.
nThread	Number of threads to parallelize across.
verbose	Print messages.

Source

Nott et al. (2019)

See Also

Other NOTT2019: NOTT2019_bigwig_metadata, NOTT2019_epigenomic_histograms(), NOTT2019_get_epigenomic_peaks(), NOTT2019_get_interactions(), NOTT2019_get_interactome(), NOTT2019_get_promoter_celltypes(), NOTT2019_get_promoter_interactome_data(), NOTT2019_plac_seq_plot(), NOTT2019_superenhancers(), get_NOTT2019_interactome(), get_NOTT2019_superenhancer_interactome()

Examples

regions <- NOTT2019_get_regulatory_regions()

RajLabMSSM/echoannot documentation built on Oct. 26, 2023, 2:41 p.m.