PAINTOR_process: Process PAINTOR files

In RajLabMSSM/echoannot: echoverse module: Annotate fine-mapping results

Process PAINTOR files

Description

Process PAINTOR annotation/LD-score files and upload them to Zenodo.

Usage

PAINTOR_process(
  annot_dir = "./",
  zipfile = "Functional_Annotations",
  sandbox = TRUE,
  title = "PAINTOR",
  token = Sys.getenv("zenodo_token"),
  validate = TRUE,
  verbose = TRUE
)

Arguments

annot_dir	Directory where Functional_Annotations.tar.gz data has been decompressed to.
sandbox	Whether to use the Zenodo or Zenodo Sandbox API.
token	Zenodo Personal access token.
verbose	Print messages.

Source

#### Downloading annotations #### ## Tarball be downloaded manually from here: https://ucla.box.com/s/x47apvgv51au1rlmuat8m4zdjhcniv2d ## Then decompress the tarball: tar -xvf Functional_Annotations.tar.gz

#### Installing zen4R #### ## has some system deps that have to be installed beforehand. sudo apt-get install raptor2-utils sudo apt-get install rasqal-utils sudo apt-get install librdf0-dev

RajLabMSSM/echoannot documentation built on Oct. 26, 2023, 2:41 p.m.