ROADMAP_merge_and_process: Standardize Roadmap query

In RajLabMSSM/echoannot: echoverse module: Annotate fine-mapping results

Standardize Roadmap query

Description

Standardize and filter Roadmap query results.

Usage

ROADMAP_merge_and_process(
  grl.roadmap,
  gr.snp,
  n_top = NULL,
  minoverlap = 1,
  verbose = TRUE
)

Arguments

grl.roadmap	Roadmap query results.
n_top	The number of top annotation sources (e.g. tissues) to include, sorted by greatest number of rows (i.e. the number of genomic ranges within the window).
minoverlap	A single non-negative integer. Only ranges with a minimum of minoverlap overlapping positions are considered to be overlapping. When type is "any", at least one of maxgap and minoverlap must be set to its default value.
verbose	Print messages.

See Also

Other ROADMAP: ROADMAP_construct_reference(), ROADMAP_query(), ROADMAP_tabix()

RajLabMSSM/echoannot documentation built on Oct. 26, 2023, 2:41 p.m.