standardize_gene_locus_cols: Standardizse gene/locus columns
In RajLabMSSM/echodata: echoverse module: Fine-mapping data access and formatting
View source: R/standardize_gene_locus_cols.R
standardize_gene_locus_cols R Documentation
Standardizse gene/locus columns
Description
Standardizse Gene and Locus columns in topSNPs.
Usage
standardize_gene_locus_cols(
topSNPs,
Locus = "Locus",
Gene = "Gene",
grouping_vars = Locus,
verbose = TRUE
)
Arguments
Locus
Column containing unique locus name.
grouping_vars
The variables that you want to group by
such that each grouping_var combination has its own index SNP.
For example, if you want one index SNP per QTL eGene -
GWAS locus pair, you could supply:
grouping_vars=c("Locus","Gene").
verbose
Print messages.
Value
topSNPs
RajLabMSSM/echodata documentation built on Nov. 21, 2023, 8 a.m.
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View source: R/standardize_gene_locus_cols.R
| standardize_gene_locus_cols | R Documentation |
Standardizse gene/locus columns
Description
Standardizse Gene and Locus columns in topSNPs.
Usage
standardize_gene_locus_cols(
topSNPs,
Locus = "Locus",
Gene = "Gene",
grouping_vars = Locus,
verbose = TRUE
)
Arguments
Locus |
Column containing unique locus name. |
grouping_vars |
The variables that you want to group by
such that each grouping_var combination has its own index SNP.
For example, if you want one index SNP per QTL eGene -
GWAS locus pair, you could supply:
|
verbose |
Print messages. |
Value
topSNPs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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