topSNPs_Nalls2019: TopSS example file (processed): Nalls2019
In RajLabMSSM/echodata: echoverse module: Fine-mapping data access and formatting
topSNPs_Nalls2019 R Documentation
TopSS example file (processed): Nalls2019
Description
Summary stats of the top SNP(s) per locus.
Used to query locus subsets.for fine-mapping.
Usage
data("topSNPs_Nalls2019")
Format
An object of class data.table (inherits from data.frame) with 97 rows and 7 columns.
Details
Formerly topSNPs.
Source
topSS <- echodata::topSNPs_Nalls2019_raw
topSNPs_Nalls2019 <- echodata::import_topSNPs(topSS=topSS,
CHR="CHR",
POS="BP",
SNP="SNP",
P="P, all studies",
Effect="Beta, all studies",
Gene="Nearest Gene",
Locus="Nearest Gene",
remove_variants="rs34637584")
usethis::use_data(topSNPs_Nalls2019, overwrite=TRUE)
RajLabMSSM/echodata documentation built on Nov. 21, 2023, 8 a.m.
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| topSNPs_Nalls2019 | R Documentation |
TopSS example file (processed): Nalls2019
Description
Summary stats of the top SNP(s) per locus. Used to query locus subsets.for fine-mapping.
Usage
data("topSNPs_Nalls2019")
Format
An object of class data.table (inherits from data.frame) with 97 rows and 7 columns.
Details
Formerly topSNPs.
Source
topSS <- echodata::topSNPs_Nalls2019_raw
topSNPs_Nalls2019 <- echodata::import_topSNPs(topSS=topSS,
CHR="CHR",
POS="BP",
SNP="SNP",
P="P, all studies",
Effect="Beta, all studies",
Gene="Nearest Gene",
Locus="Nearest Gene",
remove_variants="rs34637584")
usethis::use_data(topSNPs_Nalls2019, overwrite=TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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