topSNPs_Nalls2019_raw: TopSS example file: Nalls2019
In RajLabMSSM/echodata: echoverse module: Fine-mapping data access and formatting

topSNPs_Nalls2019_raw

R Documentation

TopSS example file: Nalls2019

Description

Summary stats of the top SNP(s) per locus. Used to query locus subsets.for fine-mapping.

Usage

data("topSNPs_Nalls2019_raw")

Format

An object of class data.table (inherits from data.frame) with 107 rows and 31 columns.

Details

Formerly topSNPs_Nalls2019.

Data from Nalls et al. (bioRxiv), Table S2.

Source

https://github.com/RajLabMSSM/Fine_Mapping/raw/master/Data/GWAS/Nalls23andMe_2019/Nalls2019_TableS2.xlsx local <- file.path(tempdir(),"Nalls2019_TableS2.xlsx") utils::download.file( paste("https://github.com/RajLabMSSM/Fine_Mapping", "raw/master/Data/GWAS/Nalls23andMe_2019", "Nalls2019_TableS2.xlsx"), local, sep="/") topSNPs_Nalls2019_raw <- data.table::data.table(readxl::read_excel(local)) usethis::use_data(topSNPs_Nalls2019_raw, overwrite=TRUE)

RajLabMSSM/echodata documentation built on Nov. 21, 2023, 8 a.m.