topSNPs_reader: Read in top SNPs
In RajLabMSSM/echodata: echoverse module: Fine-mapping data access and formatting

topSNPs_reader

R Documentation

Read in top SNPs

Read in topSNPs (from disk).

topSNPs_reader(topSS, sheet = 1, startRow = 1, cols, ...)

`sheet`	The name or index of the sheet to read data from.
`startRow`	first row to begin looking for data. Empty rows at the top of a file are always skipped, regardless of the value of startRow.
`cols`	A numeric vector specifying which columns in the Excel file to read. If NULL, all columns are read.
`...`	Arguments passed on to `openxlsx::read.xlsx` `xlsxFile` An xlsx file, Workbook object or URL to xlsx file. `colNames` If `TRUE`, the first row of data will be used as column names. `rowNames` If `TRUE`, first column of data will be used as row names. `detectDates` If `TRUE`, attempt to recognise dates and perform conversion. `skipEmptyRows` If `TRUE`, empty rows are skipped else empty rows after the first row containing data will return a row of NAs. `skipEmptyCols` If `TRUE`, empty columns are skipped. `rows` A numeric vector specifying which rows in the Excel file to read. If NULL, all rows are read. `check.names` logical. If TRUE then the names of the variables in the data frame are checked to ensure that they are syntactically valid variable names `sep.names` One character which substitutes blanks in column names. By default, "." `namedRegion` A named region in the Workbook. If not NULL startRow, rows and cols parameters are ignored. `na.strings` A character vector of strings which are to be interpreted as NA. Blank cells will be returned as NA. `fillMergedCells` If TRUE, the value in a merged cell is given to all cells within the merge.