ImputeWeights: function to caculate impute weights

In RyanYip-Kat/yipCat: Some function like ArchR style in Seurat Object

Description

function to caculate impute weights

Usage

ImputeWeights(
  object = NULL,
  reducedDims = "IterativeLSI",
  dimsToUse = NULL,
  corCutOff = 0.75,
  td = 3,
  ka = 4,
  sampleCells = 5000,
  nRep = 2,
  k = 15,
  epsilon = 1,
  randomSuffix = FALSE,
  threads = 8,
  seed = 1,
  verbose = TRUE,
  ...
)

Arguments

object	an seurat object.
reducedDims	Embedding name in seurat object.
dimsToUse, integer	number of dims to use.
sampleCells	number of sample cells used

RyanYip-Kat/yipCat documentation built on Dec. 18, 2021, 11:55 a.m.