exportCellPhoneDB: a function to export count and metadata for cellphonedb

In RyanYip-Kat/yipCat: Some function like ArchR style in Seurat Object

Description

a function to export count and metadata for cellphonedb

Usage

exportCellPhoneDB(
  seurat = NULL,
  cells = NULL,
  features = NULL,
  slot = "data",
  selectCol = "seurat_clusters",
  species = "human",
  outdir = "cellphoneDB",
  path2CPDB = findCellPhoneDB(),
  runCPDB = FALSE
)

Arguments

seurat	a seurat object
cells	feature names vector.
slot	which slot to use.
selectCol	which column to export as cell_type.
outdir	path to save tables
runCPDB	whether to run cellphonedb
cellphonedbPath	cellphonedb path

RyanYip-Kat/yipCat documentation built on Dec. 18, 2021, 11:55 a.m.