DAPlot: Volcano Plot of Difference Analysis Markers

In RyanYip-Kat/yipCat: Some function like ArchR style in Seurat Object

Description

Volcano Plot of Difference Analysis Markers

Usage

DAPlot(
  deDF = NULL,
  origin = "seurat",
  showGenes = NULL,
  cutoff = 0.5,
  x_limit = 5,
  y_limit = 0,
  down = "HC",
  up = "VKH",
  colorManual = c("skyblue", "gray", "red"),
  outdir = "Plots"
)

Arguments

deDF	markers DataFrame
origin	the markers from which platform,only support seurat and scanpy
showGenes	the genew want to show in Volcano
cutoff	the value to cutoff log2fc
x_limit	the limits value for x_axis
y_limit	the limits value for y_axis
down	which value as down and show in left
up	which value as up and show in right
colorManual	color platte for scale_color_manual
outdir	path to save plot

RyanYip-Kat/yipCat documentation built on Dec. 18, 2021, 11:55 a.m.