dot-transform10XH5: transform cutsom matrix into 10X h5 matrix
In RyanYip-Kat/yipCat: Some function like ArchR style in Seurat Object
Description
transform cutsom matrix into 10X h5 matrix
Usage
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.transform10XH5(
crgPython = "python",
targetMatrix = "outs/filtered_feature_bc_matrix",
CRH5 = "filtered_feature_bc_matrix.h5",
outH5 = "filtered_feature_bc_matrix_gold.h5",
path2CRG = "cellranger"
)
Arguments
crgPython
path of cellranger python,eg(cellranger-3.1.0/miniconda-cr-cs/4.3.21-miniconda-cr-cs-c10/bin/python)
targetMatrix
target matrix want to transform eg(outs/filtered_feature_bc_matrix)
outH5
h5 file to store output
path2CRG
path of cellranger
RyanYip-Kat/yipCat documentation built on Dec. 18, 2021, 11:55 a.m.
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Description
transform cutsom matrix into 10X h5 matrix
Usage
1 2 3 4 5 6 7 | .transform10XH5(
crgPython = "python",
targetMatrix = "outs/filtered_feature_bc_matrix",
CRH5 = "filtered_feature_bc_matrix.h5",
outH5 = "filtered_feature_bc_matrix_gold.h5",
path2CRG = "cellranger"
)
|
Arguments
crgPython |
path of cellranger python,eg(cellranger-3.1.0/miniconda-cr-cs/4.3.21-miniconda-cr-cs-c10/bin/python) |
targetMatrix |
target matrix want to transform eg(outs/filtered_feature_bc_matrix) |
outH5 |
h5 file to store output |
path2CRG |
path of cellranger |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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