generateCloupe: run cellranger reanalysis(only for cellranger version 3.1.0)

In RyanYip-Kat/yipCat: Some function like ArchR style in Seurat Object

Description

run cellranger reanalysis(only for cellranger version 3.1.0)

Usage

generateCloupe(
  crgPython = "python",
  targetMatrix = "outs/filtered_feature_bc_matrix",
  CRH5 = "filtered_feature_bc_matrix.h5",
  id = "reanalysis",
  path2CRG = "/home/ye/Software/cellranger-3.1.0"
)

Arguments

crgPython	path of cellranger python,eg(cellranger-3.1.0/miniconda-cr-cs/4.3.21-miniconda-cr-cs-c10/bin/python)
targetMatrix	target matrix want to transform eg(outs/filtered_feature_bc_matrix)
id	id name
path2CRG	path of cellranger,only support cellranger-3.1.0

Examples

path2CRG="/home/test/Software/cellranger-3.1.0"

RyanYip-Kat/yipCat documentation built on Dec. 18, 2021, 11:55 a.m.