ArchRHeatmap: function for matrix to doheatmap in archr Style

In RyanYip-Kat/yipCat: Some function like ArchR style in Seurat Object

Description

function for matrix to doheatmap in archr Style

Usage

ArchRHeatmap(
  mat = NULL,
  scale = FALSE,
  limits = c(min(mat), max(mat)),
  colData = NULL,
  color = paletteContinuous(set = "solarExtra", n = 100),
  clusterCols = TRUE,
  clusterRows = FALSE,
  labelCols = FALSE,
  labelRows = FALSE,
  colorMap = NULL,
  useRaster = TRUE,
  rasterQuality = 5,
  split = NULL,
  fontSizeRows = 10,
  fontSizeCols = 10,
  fontSizeLabels = 8,
  colAnnoPerRow = 4,
  showRowDendrogram = FALSE,
  showColDendrogram = FALSE,
  customRowLabel = NULL,
  customRowLabelIDs = NULL,
  customColLabel = NULL,
  customColLabelIDs = NULL,
  customLabelWidth = 0.75,
  rasterDevice = "png",
  padding = 45,
  borderColor = NA,
  draw = TRUE,
  name = "Heatmap"
)

Arguments

mat	an matrix as sparse matrix
scale	bool value,wether to do scale in heatmap.
limits	limit the min and max value in mat.
colData	provide cell bar in top heatmap if it is not null.
clusterCols	same as clusterRows.
clusterRows	bool value,whether do cluster in row.
customRowLabel	custom label in row want to show. ...
seurat	An 'Seurat' object.

RyanYip-Kat/yipCat documentation built on Dec. 18, 2021, 11:55 a.m.