CPDBHeatmaps: heatmap plot for cellphone output

In RyanYip-Kat/yipCat: Some function like ArchR style in Seurat Object

Description

heatmap plot for cellphone output

Usage

CPDBHeatmaps(
  meta_file = NULL,
  pvalues_file = NULL,
  count_filename = "count_heatmap.pdf",
  log_filename = "logcount_heatmap.pdf",
  count_network_filename = "count_network.txt",
  interaction_count_filename = "interaction_count.txt",
  count_network_separator = "\t",
  interaction_count_separator = "\t",
  show_rownames = T,
  show_colnames = T,
  scale = "none",
  cluster_cols = T,
  border_color = "white",
  cluster_rows = T,
  fontsize_row = 11,
  fontsize_col = 11,
  main = "",
  treeheight_row = 0,
  family = "Arial",
  treeheight_col = 0,
  col1 = "dodgerblue4",
  col2 = "peachpuff",
  col3 = "deeppink4",
  meta_sep = "\t",
  pvalues_sep = "\t",
  pvalue = 0.05
)

Arguments

meta_file	meta data file,cell_meta.txt
pvalues_file	the cellphone method analysis out's pvalues.txt file
pvaue	pvalue Threshold.

RyanYip-Kat/yipCat documentation built on Dec. 18, 2021, 11:55 a.m.