getSeuratTrajectory: function to get Trajectory Object.

In RyanYip-Kat/yipCat: Some function like ArchR style in Seurat Object

Description

function to get Trajectory Object.

Usage

getSeuratTrajectory(
  seurat = NULL,
  splitBy = NULL,
  useFM = FALSE,
  name = "Trajectory",
  groupEvery = 1,
  log2Norm = TRUE,
  slot = "data",
  features = NULL,
  scaleTo = 10000,
  smoothWindow = 11,
  threads = 16
)

Arguments

seurat	an 'seurat' object.
splitBy	column in 'meta.data' use as ident for find marker or spliting for features.
useFM	bool value,whether to use 'FindMarkers'.
name	the trajectory'name in 'meta.data' after caculate specify trajectory.
slot	slot name in seurat.
features	list of features,each list include many genes.

RyanYip-Kat/yipCat documentation built on Dec. 18, 2021, 11:55 a.m.