API for Struglab/RVS
Robust Variance Score (RVS) test for association of variants from next generation sequence data with binary traits using external controls
| Global functions | |
|---|---|
| RVS_asy | Man page |
| RVS_btrap | Man page |
| RVS_rare | Man page |
| RVS_rare1 | Man page |
| RVS_rare2 | Man page |
| calc_EG | Man page |
| calc_EG_Var | Man page |
| calc_EG_Var_general | Man page |
| calc_EG_general | Man page |
| calc_EM | Man page |
| calc_Mr | Man page |
| calc_ScoreV | Man page |
| calc_ScoreV_RVS | Man page |
| calc_ScoreV_likely | Man page |
| calc_ScoreV_regVar | Man page |
| calc_centralize_matrix | Man page |
| calc_pobs_ndepth | Man page |
| calc_psingle | Man page |
| calc_robust_Var | Man page |
| calc_score_test | Man page |
| calc_score_test1 | Man page |
| calc_simu_exp | Man page |
| check_hom_matrix | Man page |
| clist | Man page |
| combine_twogeno | Man page |
| common_coord | Man page |
| convert | Man page |
| cor.X.function | Man page |
| filter_VCF_SNPs | Man page |
| filter_by_miss | Man page |
| filter_genocall | Man page |
| generate_seq_1ind | Man page |
| generate_seqdata_1var | Man page |
| generate_seqdata_OR | Man page |
| generate_seqdata_OR1 | Man page |
| geno_add_2pheno | Man page |
| geno_process | Man page |
| get_IDs | Man page |
| get_allele_frq | Man page |
| get_exp_MAF | Man page |
| get_exp_geno | Man page |
| get_likelihood_vcf | Man page |
| get_lsingle_vcf | Man page |
| minor_allele | Man page |
| odds.2.probs | Man page |
| ped_2_additive | Man page |
| rbindlist | Man page |
| regScore_Rao | Man page |
| regScore_perm | Man page |
| regScore_rare | Man page |
| regScore_rare1 | Man page |
| reset_minor_additive | Man page |
| sample_bootstrap | Man page |
| seq_call | Man page |
| seq_eg_freq | Man page |
| seqdata_nvar | Man page |
| sim.corr.binary.data | Man page |
| snp_true_2T | Man page |
| subset_ind | Man page |
| subset_snp | Man page |
| test_CAST | Man page |
| test_Calpha | Man page |
| test_Hotelling | Man page |
| vcf_process | Man page |
