curatedPCaData: curatedPCaData
In Syksy/curatedPCaData: Curated Prostate Cancer Data
curatedPCaData R Documentation
curatedPCaData
Description
The package curatedPCaData offers a selection of annotated
prostate cancer datasets featuring multiple omics, manually
curated metadata, and derived downstream variables. The studies
are offered as MultiAssayExperiment (MAE) objects via ExperimentHub,
and comprise of clinical characteristics tied to gene expression,
copy number alteration and somatic mutation data. Further, downstream
features computed from these multi-omics data are offered. Multiple
vignettes help grasp characteristics of the various studies and provide
example exploratory and meta-analysis of leveraging the multiple
studies provided here-in.
Author(s)
Maintainer: Teemu Daniel Laajala teelaa@utu.fi (ORCID)
Other contributors:
Jordan Creed jordan.h.creed@moffitt.org [contributor]
Christelle Colin Leitzinger christelle.colinleitzinger@moffitt.org [contributor]
Varsha Sreekanth varsha.sreekanth@cuanschutz.edu [contributor]
Federico Calboli federico.calboli@luke.fi [contributor]
Kalaimathy Singaravelu kalsin@utu.fi [contributor]
Michael Orman michael.orman@cuanschutz.edu [contributor]
Alex Soupir Alex.Soupir@moffitt.org [contributor]
Anni Halkola ansuha@utu.fi [contributor]
See Also
Useful links:
Syksy/curatedPCaData documentation built on Nov. 4, 2023, 9:46 a.m.
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| curatedPCaData | R Documentation |
curatedPCaData
Description
The package curatedPCaData offers a selection of annotated prostate cancer datasets featuring multiple omics, manually curated metadata, and derived downstream variables. The studies are offered as MultiAssayExperiment (MAE) objects via ExperimentHub, and comprise of clinical characteristics tied to gene expression, copy number alteration and somatic mutation data. Further, downstream features computed from these multi-omics data are offered. Multiple vignettes help grasp characteristics of the various studies and provide example exploratory and meta-analysis of leveraging the multiple studies provided here-in.
Author(s)
Maintainer: Teemu Daniel Laajala teelaa@utu.fi (ORCID)
Other contributors:
Jordan Creed jordan.h.creed@moffitt.org [contributor]
Christelle Colin Leitzinger christelle.colinleitzinger@moffitt.org [contributor]
Varsha Sreekanth varsha.sreekanth@cuanschutz.edu [contributor]
Federico Calboli federico.calboli@luke.fi [contributor]
Kalaimathy Singaravelu kalsin@utu.fi [contributor]
Michael Orman michael.orman@cuanschutz.edu [contributor]
Alex Soupir Alex.Soupir@moffitt.org [contributor]
Anni Halkola ansuha@utu.fi [contributor]
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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