curatedPCaDatasets_kunderfranco: Kunderfranco et al. MAE-object

In Syksy/curatedPCaData: Curated Prostate Cancer Data

Kunderfranco et al. MAE-object

Description

MultiAssayExperiment object containing gene expression (gex) and immune cell estimates from Kunderfranco et al.

Format

An MAE object spanning 67 samples of normal prostate samples and prostate cancer samples

gex.logr

matrix with 16546 rows and 67 columns, of gene expression data

cibersort

matrix with 22 rows and 67 columns, of cibersort based deconvolution data

xcell

matrix with 39 rows and 67 columns, of xcell based deconvolution data

epic

matrix with 8 rows and 67 columns, of epic based deconvolution data

quantiseq

matrix with 11 rows and 67 columns, of quantiseq based deconvolution data

estimate

data.frame with 4 rows and 67 columns, of cell types based on ESTIMATE method

scores

matrix with 2 rows and 67 columns, of risk scores and AR scores

mcp

matrix with 11 rows and 67 columns, of mcp-counter based deconvolution data

Details

The data contains 14 disease free benign prostate hyperplasia samples and 53 prostate cancer samples.

Value

A MultiAssayExperiment corresponding to the study and its available omics.

Source

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14206

References

(PubMed)

Examples

mae_kunderfranco <- getPCa('kunderfranco')

Syksy/curatedPCaData documentation built on Nov. 4, 2023, 9:46 a.m.