curatedPCaDatasets_taylor: Taylor et al. MAE-object
In Syksy/curatedPCaData: Curated Prostate Cancer Data

curatedPCaDatasets_taylor

R Documentation

Taylor et al. MAE-object

MultiAssayExperiment object containing gene expression (gex), copy number alteration (cna), mutations and immune cell estimates from Taylor et al.

An MAE object spanning 218 men with prostate cancer

cna.gistic: matrix with 17832 rows and 194 columns, of gistic values for copy number alteration data
cna.logr: matrix with 18062 rows and 218 columns, of log-ratios for copy number alteration data
gex.rma: matrix with 17410 rows and 179 columns, of gene expression data
mut: RaggedExperiment with 90 rows and 43 columns, of mutation data
cibersort: matrix with 22 rows and 179 columns, of cibersort based deconvolution data
xcell: matrix with 39 rows and 179 columns, of xcell based deconvolution data
epic: matrix with 8 rows and 179 columns, of epic based deconvolution data
quantiseq: matrix with 11 rows and 179 columns, of quantiseq based deconvolution data
estimate: data.frame with 4 rows and 179 columns, of cell types based on ESTIMATE method
scores: matrix with 4 rows and 179 columns, of risk scores and AR scores
mcp: matrix with 11 rows and 179 columns, of mcp-counter based deconvolution data